Use this URL to cite or link to this record in EThOS: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.815418
Title: Gland instance segmentation in colon histology images
Author: Wang, Li Yang
ISNI:       0000 0004 9357 8011
Awarding Body: University of Central Lancashire
Current Institution: University of Central Lancashire
Date of Award: 2019
Availability of Full Text:
Access from EThOS:
Access from Institution:
Abstract:
This thesis looks at approaches to gland instance segmentation in histology images. The aim is to find suitable local image representations to describe the gland structures in images with benign tissue and those with malignant tissue and subsequently use them for design of accurate, scalable and flexible gland instance segmentation methods. The gland instance segmentation is a clinically important and technically challenging problem as the morphological structure and visual appearance of gland tissue is highly variable and complex. Glands are one of the most common organs in the human body. The glandular features are present in many cancer types and histopathologists use these features to predict tumour grade. Accurate tumour grading is critical for prescribing suitable cancer treatment resulting in improved outcome and survival rate. Different cancer grades are reflected by differences in glands morphology and structure. It is therefore important to accurately segment glands in histology images in order to get a valid prediction of tumour grade. Several segmentation methods, including segmentation with and without pre-classification, have been proposed and investigated as part of the research reported in this thesis. A number of feature spaces, including hand-crafted and deep features, have been investigated and experimentally validated to find a suitable set of image attributes for representation of benign and malignant gland tissue for the segmentation task. Furthermore, an exhaustive experimental examination of different combinations of features and classification methods have been carried out using both qualitative and quantitative assessments, including detection, shape and area fidelity metrics. It has been shown that the proposed hybrid method combining image level classification, to identify images with benign and malignant tissue, and pixel level classification, to perform gland segmentation, achieved the best results. It has been further shown that modelling benign glands using a three-class model, i.e. inside, outside and gland boundary, and malignant tissue using a two-class model is the best combination for achieving accurate and robust gland instance segmentation results. The deep learning features have been shown to overall outperform handcrafted features, however proposed ring-histogram features still performed adequately, particularly for segmentation of benign glands. The adopted transfer-learning model with proposed image augmentation has proven very successful with 100% image classification accuracy on the available test dataset. It has been shown that the modified object- level Boundary Jaccard metric is more suitable for measuring shape similarity than the previously used object-level Hausdorff distance, as it is not sensitive to outliers and could be easily integrated with region- based metrics such as the object-level Dice index, as contrary to the Hausdorff distance it is bounded between 0 and 1. Dissimilar to most of the other reported research, this study provides comprehensive comparative results for gland segmentation, with a large collection of diverse types of image features, including hand-crafted and deep features. The novel contributions include hybrid segmentation model superimposing image and pixel level classification, data augmentation for re-training deep learning models for the proposed image level classification, and the object- level Boundary Jaccard metric adopted for evaluation of instance segmentation methods.
Supervisor: Not available Sponsor: Not available
Qualification Name: Thesis (Ph.D.) Qualification Level: Doctoral
EThOS ID: uk.bl.ethos.815418  DOI: Not available
Keywords: C900 - Others in Biological Sciences
Share: