Title:
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Dinucleosome reconstitution and transcription
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DNA is packaged into eukaryotic cell nuclei in a
highly condensed form, the chromosomes, the basic
repeating unit of which is the nucleosome. It has been
postulated that the way in which specific genes are
packaged into these structures influences the regulation
of expression of the genes and may therefore play a
central role in differentiation. Studies todate have
shown that the structure of individual genes in cell
types in which they are expressed, differ from that in
cell types where the gene is quiescent. However, there
have been no studies in which the detailed relationship
between the DNA sequence and the nucleosomes for an
individual gene (transcribed by RNA polymerase II) have
been ident ified.
In this project I have attempted to reconstitute
dinucleosomes on restriction fragments of the human
beta-globin gene in order to determine the effects of
nucleosomes on promoter usage iji vitro. Using a range
of fragments prepared from sonicated calf thymus DNA the
optimum size of DNA fragment required to reconstitute
dinucleosomes was determined as 350+10 bp. Several
different reconstitution procedures were employed, none
of them were found to be entirely suitable for
recovering purified dinucleosomes. A hybrid of these
methods was finally chosen.
The published sequence data for the human betaglobin gene was searched for restriction fragments of
350+10 bp containing the promoter region of the gene
using a computer programme. These fragments were subcloned and purified in large amounts (> 100 ug ). During
the course of these experiments several sub-cloning
artefacts were discovered, the problems of sub-cloning
are discussed. The transcription of these fragments in
vitro was investigated using whole cell lysates prepared
from HeLa cells to generate specific run-off
transcripts.
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