Title:
|
Investigation of dysregulation of TDP-43 and its role in molecular pathology
|
TAR-DNA-binding protein 43 kDa (TDP-43) is an RNA/DNA binding protein that is
involved in amyotrophic lateral sclerosis (ALS), frontotemporal lobar degeneration
(FTLD), and a number of other neurological diseases that have been currently
classified as TDP-43 proteinopathies. Defects in the control of TDP-43 expression
levels may contribute to the neurodegeneration process observed in patients.
TDP-43 autoregulation depends on a particular 700 nucleotides long sequence,
the TOP Binding Region (TDPBR) within the TDP-43 3' UTR which contains
several low affinity binding sites for TDP-43. If TDP-43 nuclear levels rise,
increased binding to the TDPBR can trigger in a fraction of the nascent pre-mRNA
molecules, a specific splicing event that removes the main poly(A) site, leading to
an alternative poly(A) transcript that promotes mRNA instability.
In the first part of this thesis I have determined that constitutive spliceosome
formation across the intron 7 leads to low RNA and protein TDP-43 production.
This event is in part caused by an altered nucleo-cytoplasmic distribution of the
RNA. In the second part of the study, using a series of minigenes, I mapped some
of the splicing cis regulatory elements within the TDPBR and the consequence of
the variations of these elements in TDP-43 autoregulation. These data indicates
that the elements within intron 7 act in an orchestrated way to sense the TDP-43
level variations. Furthermore, I demonstrated that the distance between the intron
7 and the pOly(A)2, can explain the reduced levels of TDP-43 observed when
autoregulation is triggered.
In conclusion this mechanism represents a novel type of auto-regulatory pathway
to control cell viability, which acts through pre-mRNA alternative splicing and
polyadenylation leading to mRNA degradation that is quite distinct from nonsense
mediated decay (NMD).
|