Title:
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Poly(A) binding proteins in human mitochondria
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Mitochondria are organelles present in all nucleated eukaryotic cells. They play a
central role in the conversion of metabolic fuels to a readily ·utilisable source of
energy in the form of ATP. One of the most distinct features of mitochondria is the
possession of their own genome (mtDNA). The mammalian mitochondrial genome
encodes only 13 peptides, all of which all are involved in oxidative phosphorylation,
in addition to all the RNA components necessary for the intra-mitochondrial
translation machinery. Since mitochondria comprise greater than 1000 proteins, the
majority of mitochondrial proteins are encoded by the nucleus, synthesized in the
cytosol and then imported into mitochondria.
In mammals, all mRNA species encoded by mtDNA exhibit constitutive oligo- or
poly- adenylation. The poly(A) tails are generally 50-60 nt in length and stable,
suggesting that they are protected from nucleases, potentially by the existence of a
mitochondrial poly(A) binding protein. In the eukaryotic cytosol, a number of forms
of poly(A)-binding proteins (PABPs) exist and are central to the regulation of RNA
stability and translation. To date, no such protein has been isolated from mammalian
mitochondria. Extensive in silico studies have not yielded any candidates, and so a
biochemical approach with an extended FPLC purification scheme has been used to
isolate the putative candidates for this activity from rat liver mitochondria.
A subset of fractions .derived from this purification have been analysed by
electrophoretic mobility shift assay and a number have demonstrated specific
poly(A) binding activity using an in vitro derived radiolabelled substrate. The Mass
spectro~copy analysis of these 'poly(A) binding' fractions indicated that the highest abundance proteins are ACATI and ACAA2. These are mitochondrial proteins with
well characterised metabolic activities but no recognised RNA binding motifs. Over-
Poly(A) binding proteins in human mitochondria Mateusz Wydro
expression of recombinant ACATI and ACAA2 followed by in vitro studies revealed
that both candidates exhibit specific poly(A) binding with weak affinity. The
physiological role of this interaction, if any, remains unclear.
A second approach that I have taken has been to target a known cytosolic poly(A)
binding protein, PABPC1, to the human mitochondria in an inducible manner and
observe any consequent changes in mt-mRNA metabolism. Here, I show that
mitochondrially targeted (mt-PABPCI) is able to interact with the mitochondrial
mRNA poly(A) region. Binding of mt-PABPCI resulted in shortening of all
investigated mitochondrial mRNAs, but does not induce a concomitant loss of RNA
stability. In response to mt-PABPC1 binding, however, mitochondrial translation is
compromised, leading to a severe respiratory phenotype, consistent with the loss of
mitochondrially-encoded polypeptides. I conclude that the mitochondrial translation
inhibition is due to mt-PABPCI competition with endogenous protein(s) that interact
with the poly(A) that are necessary to promote mitochondrial protein synthesis.
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