Title:
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Individual Based Modelling of Bacteria-Bacteriophage Interactions
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This thesis presents a novel individual based model capable of simulating the types of behaviour
observed between bacteria and phage. Parasite-host relationships in bacterial ecology
have commonly been modelled using a top-down differential ~quation approach tnat
describes populations as single entities. These biological systems are intrinsically based on
individuals whose behaviour relies on the interactions of many. A bottom-up, individualbased
modelling approach has been used to simulate the behaviour observed between a
bacterium and its corresponding bacteriophage. The use of individual based models has
gained in popularity with the development of more powerful computers and is firmly established
within current literature. The object-oriented programming language Java has been
used to create Single, Co and Super infection models and the agent-based software Netlogo
used to create a spatially explicit model. All the models were able to successfully recreate
the real-life dynamics of bacteria and bacteriophage. Parameter space was explored within
the models to investigate the effect of resource enrichment and flow rate within· a chemostat
environment and to predict the persistence of phag~ within a bacterial population. An
emergent individual based methodology founded on solid experimental data has forged a
novel model that can highlight specific areas for further research and provide support for the
outcome of investigational studies. Predicted future improvements In computing power will
allow for the boundaries and possibilities of ecological modelling to be expanded and this
work provides a basis from which to examine this pote~tial. These models provide scope
for the investigation of a wide range of organisms as well as studies of parasite virulence,
spatial dynamics and adaptive responses to selection pressures.
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