The integration of FPGA devices in many different architectures and services makes monitoring and real time detection of errors an important concern in FPGA system design. A monitor is a tool, or a set of tools, that facilitate analytic measurements in observing a given system. The goal of these observations is usually the performance analysis and optimisation, or the surveillance of the system. However, System-on-Chip (SoC) based designs leave few points to attach external tools such as logic analysers. Thus, an embedded error detection core that allows observation of critical system nodes (such as processor cores and buses) should enforce the operation of the FPGA-based system, in order to prevent system failures. The core should not interfere with system performance and must ensure timely detection of errors. This thesis is an investigation onto how a robust hardware-monitoring module can be efficiently integrated in a target PCI board (with FPGA-based application processing features) which is part of a critical computing system.